Repository

The repository contains bnet files for various example networks including citations for publications where appropriate. Each network has a name by which its bnet string and primes dictionary can be retrieved. These are get_bnet and get_primes, respectively. In addition the function get_all_names can be used for iterating over all existing names. The following is a list of all networks available in pyboolnet.

The motivation for the repository is to make it easier to share networks by referring to a fixed file, to gather analysis results and provide a benchmark set for analysis tools. Further information about the repository can be found at:

https://github.com/hklarner/pyboolnet/tree/master/repository

arellano_rootstem

Interaction graph of arellano_rootstem.

dahlhaus_neuroplastoma

Interaction graph of dahlhaus_neuroplastoma.

davidich_yeast

Interaction graph of davidich_yeast.

dinwoodie_life

Interaction graph of dinwoodie_life.

faure_cellcycle

Interaction graph of faure_cellcycle.

grieco_mapk

Interaction graph of grieco_mapk.

irons_yeast

Interaction graph of irons_yeast.

klamt_tcr

Interaction graph of klamt_tcr.

raf

Interaction graph of raf.

randomnet_n15k3

Interaction graph of randomnet_n15k3.

randomnet_n7k3

Interaction graph of randomnet_n7k3.

remy_tumorigenesis

Interaction graph of remy_tumorigenesis.

saadatpour_guardcell

Interaction graph of saadatpour_guardcell.

tournier_apoptosis

Interaction graph of tournier_apoptosis.

xiao_wnt5a

Interaction graph of xiao_wnt5a.