Repository

The repository contains bnet files for various example networks including citations for publications where appropriate. Each network has a name by which its bnet string and primes dictionary can be retrieved. These are get_bnet and get_primes, respectively. In addition the function get_all_names can be used for iterating over all existing names. The following is a list of all networks available in pyboolnet.

The motivation for the repository is to make it easier to share networks by referring to a fixed file, to gather analysis results and provide a benchmark set for analysis tools. Further information about the repository can be found at:

arellano_rootstem

_static/arellano_rootstem_igraph.pdf

Interaction graph of arellano_rootstem.

dahlhaus_neuroplastoma

_images/dahlhaus_neuroplastoma_igraph.pdf

Interaction graph of dahlhaus_neuroplastoma.

davidich_yeast

_images/davidich_yeast_igraph.pdf

Interaction graph of davidich_yeast.

dinwoodie_life

_images/dinwoodie_life_igraph.pdf

Interaction graph of dinwoodie_life.

faure_cellcycle

_images/faure_cellcycle_igraph.pdf

Interaction graph of faure_cellcycle.

grieco_mapk

_images/grieco_mapk_igraph.pdf

Interaction graph of grieco_mapk.

irons_yeast

_images/irons_yeast_igraph.pdf

Interaction graph of irons_yeast.

klamt_tcr

_images/klamt_tcr_igraph.pdf

Interaction graph of klamt_tcr.

raf

_images/raf_igraph.pdf

Interaction graph of raf.

randomnet_n15k3

_images/randomnet_n15k3_igraph.pdf

Interaction graph of randomnet_n15k3.

randomnet_n7k3

_images/randomnet_n7k3_igraph.pdf

Interaction graph of randomnet_n7k3.

remy_tumorigenesis

_images/remy_tumorigenesis_igraph.pdf

Interaction graph of remy_tumorigenesis.

saadatpour_guardcell

_images/saadatpour_guardcell_igraph.pdf

Interaction graph of saadatpour_guardcell.

tournier_apoptosis

_images/tournier_apoptosis_igraph.pdf

Interaction graph of tournier_apoptosis.

xiao_wnt5a

_images/xiao_wnt5a_igraph.pdf

Interaction graph of xiao_wnt5a.